I am a core member of the Bioconductor project.

Here are some other R packages that I co-author.

Statistics for Microarray Analysis (sma).

Spot - an image analysis package.

Notes: for more information about analysis and software please see the UCSF Functional Genomics Core Facilities Analysis site.

Here is some software I use:

R , also known as "GNU S", is a freely available system for statistical computation and graphics. |

Z-Image , an image analysis system developed by the image analysis group at CSIRO, Australia. SZ-Image provides the image analysis functionality of Z-Image within the data analysis environment of S-Plus. | |

Matlab, an easy-to-use computing and visualization environment, which integrates numerical analysis, matrix computation, signal processing, and graphics. | |

S-Plus , a language for data visualization and exploration, statistical modeling and programming. |