# Research Publications for 2016

## Books

**A2.**
Hietarinta J, Joshi N and Nijhoff FW**:**
*Discrete Systems and Integrability.*
Cambridge Texts in Applied Mathematics,
M J Ablowitz, S Davis, E J Hinch, A Iserles, J Ockendon, P J Olver (ed.),
Cambridge University Press,
UK,
2016,
ISBN 978-1107669482,
440 pages.

**A3.**
Beresnevich V, Ramirez F, Velani S, Bugeaudd Y, Forni G, Austin T, Einsiedler M, Ward T and Kontorovich A**:**
*Dynamics and Analytic Number Theory.*
London Mathematical Society Lecture Note Series 437,
D. Badziahin, A. Gorodnik and N. Peyerimhoff (ed.),
Cambridge University Press,
Cambridge, UK,
2016,
ISBN 9781107552371,
xviii + 321 pages.

**A3.**
Degli Esposti M (ed.), Altmann EG (ed.) and Pachet F (ed.)**:**
*Creativity and Universality in Language.*
Lecture Notes in Morphogenesis,
M. Degli Esposti, E. G. Altmann, F. Pachet (ed.),
Springer,
Berlin, Germany,
2016,
ISBN 978-3-319-24401-3,
xii+208 pages.

**A3.**
Skokos C, Gottwald GA and Laskar J**:**
*Chaos Detection and Predictability.*
Lecture Notes in Physics,
Charlampos Skokos, Georg A. Gottwald and Jacques Laskar (ed.),
Springer,
Berlin Heidelberg,
2016,
ISBN 978-3-662-48408-1,
250 pages.

## Chapters in Books

**B1.**
Altmann EG and Gerlach M**:**
Statistical laws in linguistics,
*Creativity and Universality in Language.*
Lecture Notes in Morphogenesis,
Springer,
Berlin, Germany,
2016,
ISBN 978-3-319-24401-3,
7–26.

**B1.**
Dissanayake GS**:**
Rapid Optimal Lag Order Detection and Parameter Estimation of Standard Long Memory Time Series,
*Causal Inference in Econometrics.*
Studies in Computational Intelligence,
Springer International Publishing,
Switzerland,
2016,
ISBN 978-3-319-27283-2,
17–28.

**B1.**
Gottwald GA, Crommelin DT and Franzke CLE**:**
Stochastic climate theory,
*Nonlinear and Stochastic Climate Dynamics.*
Cambridge University Press,
Cambridge,
2016,
ISBN 9781107118140,
209–240.

**B1.**
Gottwald GA and Melbourne I**:**
The 0-1 test for chaos: A review,
*Chaos Detection and Predictability.*
Lecture Notes in Physics 915,
Springer,
Berlin Heidelberg,
2016,
ISBN 978-3-662-48408-1,
26.

**B1.**
Thomas A**:**
Lattices in hyperbolic buildings,
*Geometry, topology, and dynamics in negative curvature.*
London Mathematical Society Lecture Note Series,
Cambridge University Press,
Cambridge, UK,
2016,
ISBN 978-1-107-52900-7,
345–363.

**B1.**
Yatigammana RP, Choy STB and Chan JSK**:**
Autoregressive Conditional Duration Model with an Extended Weibull Error Distribution,
*Causal Inference in Econometrics.*
Studies in Computational Intelligence 622,
Springer,
Switzerland,
2016,
ISBN 1860-949X,
638.

## Journal Articles

**C1.**
Aché A, Maximo D and Wu H**:**
Metrics with nonnegative Ricci curvature on convex three-manifolds.
*Geometry & Topology*,
20
(2016),
no.5,
2905–2922.
MR3556351

**C1.**
Achar PN, Henderson A, Julteau D and Riche S**:**
Modular generalized Springer correspondence I: the general linear group.
*Journal of the European Mathematical Society (JEMS)*,
18
(2016),
no.7,
1405–1436.

**C1.**
Ackermann N and Dancer EN**:**
Precise exponential decay for solutions of semilinear elliptic equations and its effect on the structure of the solution set for a real analytic nonlinearity.
*Differential and Integral Equations*,
29
(2016),
no.7-8,
757–774.

**C1.**
Ahlip R and Rutkowski M**:**
Pricing of foreign exchange options under the MPT stochastic volatility model and the CIR interest rates.
*The European Journal of Finance*,
22
(2016),
no.7,
551–571.

**C1.**
Allen DE, Aleer MM, Peiris MS and Singh AK**:**
Nonlinear Time Series and Neural-Network Models of Exchange Rates between the US Dollar and Major Currencies.
*Risks*,
4
(2016),
no.7,
14 pages.

**C1.**
Allen DE, Aleer MM, Powell RJ and Singh AK**:**
Down-Side Risk Metrics as Portfolio Diversification Strategies across the Global Financial Crisis.
*Journal of Risk and Financial Management*,
9
(2016),
no.6,
1–18.

**C1.**
Allen DE, Aleer MM, Powell R and Singh AK**:**
Volatility spillover and multivariate volatility impulse response analysis of GFC news events.
*Applied Economics*,
December 2016
(2016),
18 pages.

**C1.**
Allen DE, Powell RJ and Singh AK**:**
Take it to the limit: innovative CVaR applications to extreme credit risk measurement.
*European Journal of Operational Research*,
249
(2016),
no.2,
465–475.

**C1.**
Atkinson J, Howes P, Joshi N and Nakazono N**:**
Geometry of an elliptic difference equation related to \(Q\)4.
*Journal of the London Mathematical Society*,
93
(2016),
no.93,
763–784.
MR3509963

**C1.**
Badziahin D**:**
Continuant Diophantine Equations.
*Moscow Journal of Combinatorics and Number Theory*,
6
(2016),
no.2–3,
38–55.

**C1.**
Banihashemi N, Robillard R, Yang YH, Carpenter JS, Hermens DF, Naismith SL, Terpening Z, White D, Scott EM and Hickie IB**:**
Quantifying the effect of body mass index, age, and depression severity on 24-h activity patterns in persons with a lifetime history of affective disorders.
*BMC Psychiatry*,
16 (1)
(2016),
no.317

**C1.**
Bannister H, Goldys B, Penev S and Wu W**:**
Multiperiod mean-standard-deviation time consistent portfolio selection.
*Automatica*,
73
(2016),
15–26.

**C1.**
Barbier S and Coulembier K**:**
The Joseph ideal for \(\mathfrak{sl}(m|n)\).
*Springer Proceedings in Mathematics and Statistics*,
191
(2016),
489–499.

**C1.**
Baumgartner U, Ramagge J and Willis GA**:**
Scale-multiplicative semigroups and geometry: automorphism groups of trees.
*Groups, Geometry, and Dynamics*,
10
(2016),
1051–1075.

**C1.**
Bellamy G and Thiel U**:**
Cuspidal Calogero–Moser and Lusztig families for Coxeter groups.
*Journal of Algebra*,
462
(2016),
197–252.
MR3519506

**C1.**
Bennett MR, Farnell L, Gibson WG and Lagopoulos J**:**
On the origins of the 'global signal' determined by functional magnetic resonance imaging in the resting state.
*Journal of Neural Engineering*,
13
(2016),
no.1,
1–11.

**C1.**
Bertram CD, Macaskill C and Moore JE Jr**:**
Pump function curve shape for a model lymphatic vessel.
*Medical Engineering and Physics*,
38
(2016),
656–663.

**C1.**
Bharadwaj S, Duignan N, Dullin HR, Leung K and Tong W**:**
The diver with a rotor.
*Indagationes Mathematicae*,
27
(2016),
no.5,
1147–1161.

**C1.**
Björklund M and Fish A**:**
Characteristic polynomial patterns in difference sets of matrices.
*Bulletin of the London Mathematical Society*,
(2016),
9.

**C1.**
Boie S, Kirk V, Sneyd J and Wechselberger M**:**
Effects of quasi-steady state reduction on biophysical models with oscillations.
*Journal of Theoretical Biology*,
393
(2016),
16–31.

**C1.**
Boys C**:**
Alternating quiver Hecke algebras.
*Journal of Algebra*,
449
(2016),
246–263.

**C1.**
Boys C**:**
Semisimple Representations of Alternating Cyclotomic Hecke Algebras.
*Algebras and Representation Theory*,
19
(2016),
no.1,
235–253.

**C1.**
Burridge J and Cowan R**:**
Planar tessellations that have the half-Gilbert structure.
*Advances in Applied Probability*,
48
(2016),
no.2,
574–584.

**C1.**
Cannon JJ, Garonzi M, Levy D, Maroti A and Simion II**:**
Groups equal to a product of three conjugate subgroups.
*Israel Journal of Mathematics*,
215
(2016),
31–52.

**C1.**
Carberry E and Schmidt MU**:**
The prevalence of tori amongst constant mean curvature planes in \(R^3\).
*Journal of Geometry and Physics*,
106
(2016),
352–366.

**C1.**
Carberry E and Ulrich M**:**
The closure of spectral data for constant mean curvature tori in \(S^3\).
*J. reine angew. Math*,
721
(2016),
149–166.

**C1.**
Chan JSK**:**
Predicting loss reserves using quantile regression.
*Journal of Data Science*,
13
(2016),
127–156.

**C1.**
Chan JSK**:**
Bayesian informative dropout model for longitudinal binary data with random effects using conditional and joint modeling approaches.
*Biometrical Journal*,
58
(2016),
no.3,
549–569.

**C1.**
Chan JSK and Wan WY**:**
Bayesian analysis of Cannabis offences using generalized Poisson geometric process model with flexible dispersion.
*Journal of Statistical Computation and Simulation*,
86
(2016),
no.16,
3315–3336.

**C1.**
Chan MH, Hawkes K and Kim PS**:**
Evolution of longevity, age at last birth and sexual conflict with grandmothering.
*Journal of Theoretical Biology*,
393
(2016),
145–157.

**C1.**
Chill R, Hauer D and Kennedy J**:**
Nonlinear semigroups generated by \(j\)-elliptic functionals.
*Journal de Mathematiques Pures et Appliquees*,
105
(2016),
415–450.

**C1.**
Choy STB, Chan JSK and Makov UE**:**
Robust Bayesian analysis of loss reserving data using scale mixtures distributions.
*Journal of Applied Statistics*,
43
(2016),
no.3,
396–411.

**C1.**
Clark AE, Altwegg R and Ormerod JT**:**
A Variational Bayes Approach to the Analysis of Occupancy Models.
*PLoS One*,
11
(2016),
no.2,
e0148966 (18 pages).

**C1.**
Coulembier K**:**
Bott-Borel-Weil theory and Bernstein-Gel'fand-Gel'fand reciprocity for Lie superalgebras..
*Transformation Groups*,
21
(2016),
681–723.

**C1.**
Coulembier K**:**
The primitive spectrum of a basic classical Lie superalgebra..
*Communications in Mathematical Physics*,
348
(2016),
579–602.

**C1.**
Coulembier K and Mazorchuk V**:**
Primitive ideals, twisting functors and star actions for classical Lie superalgebras..
*Journal für die Reine und Angewandte Mathematik*,
718
(2016),
207–253.

**C1.**
Daners D, Glück J and Kennedy JB**:**
Eventually positive semigroups of linear operators.
*Journal of Mathematical Analysis and Applications*,
433
(2016),
no.2,
1561–1593.
MR3398779

**C1.**
Daners D, Glück J and Kennedy JB**:**
Eventually and asymptotically positive semigroups on Banach lattices.
*Journal of Differential Equations*,
261
(2016),
no.5,
2607–2649.

**C1.**
Daners D and Thornett C**:**
Periodic-parabolic eigenvalue problems with a large parameter and degeneration.
*Journal of Differential Equations*,
261
(2016),
no.1,
273–295.

**C1.**
Dissanayake GS, Peiris MS and Proietti T**:**
State space modeling of Gegenbauer processes with long memory.
*Computational Statistics and Data Analysis*,
100
(2016),
115–130.

**C1.**
Domanova W, Krycer J, Chaudhuri R, Yang P, Vafaee F, Fazakerley D, Humphrey S, James D and Kuncic Z**:**
Unraveling Kinase Activation Dynamics Using Kinase-Substrate Relationships from Temporal Large-Scale Phosphoproteomics Studies.
*PLoS One*,
23 June 2016
(2016),
Online.

**C1.**
Domanova W, Kycer J, Chaudhuri R, Yang P, Vafaee F, Fazakerley D, Humphrey S, James D and Kuncic Z**:**
Unraveling Kinase Activation Dynamics Using Kinase-Substrate Relationships from Temporal Large-Scale Phosphoproteomics Studies.
*PLoS One*,
11
(2016),
no.6,
Art. e0157763 (14 pages).

**C1.**
Dubossarsky E, Friedman JH, Ormerod JT and Wand MP**:**
Wavelet-based gradient boosting.
*Statistics and Computing*,
26
(2016),
no.1,
93–105.

**C1.**
Dullin HR, Marangell R and Worthington J**:**
Instability of equilibria for the two-dimensional euler equations on the torus.
*SIAM Journal on Applied Mathematics*,
76
(2016),
no.4,
1446–1470.

**C1.**
Dullin HR and Montgomery R**:**
Syzygies in the two center problem.
*Nonlinearity*,
29
(2016),
no.4,
1212–1237.

**C1.**
Dullin HR and Pelayo Á**:**
Generating Hyperbolic Singularities in Semitoric Systems Via Hopf Bifurcations.
*Journal of Nonlinear Science*,
26
(2016),
no.3,
787–811.

**C1.**
Dullin HR and Tong W**:**
Twisting Somersault.
*SIAM Journal on Applied Dynamical Systems (SIADS)*,
15
(2016),
no.4,
1806–1822.

**C1.**
Easdown D and Saunders N**:**
The Minimal Faithful Permutation Degree for a Direct Product Obeying an Inequality Condition.
*Communications in Algebra*,
44
(2016),
no.8,
3518–3537.

**C1.**
Ehrig M and Stroppel C**:**
2-row Springer Fibres and Khovanov Diagram Algebras for Type D.
*Canadian Journal of Mathematics*,
68
(2016),
no.December 2016,
1285–1333.

**C1.**
Ehrig M and Stroppel C**:**
Diagrammatic description for the categories of perverse sheaves on isotropic Grassmannians.
*Selecta Mathematica New Series*,
22
(2016),
1455 – 1536.

**C1.**
Ehrig M and Stroppel C**:**
Schur–Weyl duality for the Brauer algebra and the ortho-symplectic Lie superalgebra.
*Mathematische Zeitschrift*,
284
(2016),
595–613.

**C1.**
Ehrig M and Stroppel C**:**
Koszul Gradings on Brauer Algebras.
*International Mathematics Research Notices*,
13
(2016),
3970–4011.

**C1.**
Engwirda D and Ivers DJ**:**
Off-centre Steiner points for Delaunay-refinement on curved surfaces.
*Computer-Aided Design*,
72
(2016),
157–171.

**C1.**
Fieker C and Zhang Y**:**
An application of the \(p\)-adic analytic class number formula.
*LMS Journal of Computation and Mathematics*,
19
(2016),
no.01,
217–228.

**C1.**
Frappat L, Jing N, Molev AI and Ragoucy E**:**
Higher Sugawara Operators for the Quantum Affine Algebras of Type A.
*Communications in Mathematical Physics*,
345
(2016),
631–657.

**C1.**
Froyland G, Gottwald GA and Hammerlindl A**:**
A trajectory-free framework for analysing multiscale systems.
*Physica D*,
328-329
(2016),
34–43.

**C1.**
Fung T and Seneta E**:**
Tail asymptotics for the bivariate skew normal.
*Journal of Multivariate Analysis*,
144
(2016),
129–138.

**C1.**
Garcia TP and Müller S**:**
Cox regression with exclusion frequency-based weights to identify neuroimaging markers relevant to Huntington's disease onset.
*The Annals of Applied Statistics*,
10
(2016),
no.4,
2130–2156.

**C1.**
Geoghegan JL, Senior AM, Giallonardo FD and Holmes EC**:**
Virological factors that increase the transmissibility of emerging human viruses.
*Proceedings of the National Academy of Sciences of the United States of America*,
113
(2016),
no.15,
4170–4175.

**C1.**
Geoghegan JL, Senior AM and Holmes EC**:**
Pathogen population bottlenecks and adaptive landscapes: overcoming the barriers to disease emergence.
*Proceedings of the Royal Society B: Biological Sciences*,
283
(2016),
no.1837 (Art. 20160727),
9 pages.

**C1.**
Gerlach M, Font-Clos F and Altmann EG**:**
On the similarity of symbol-frequency distributions with heavy tails.
*Phys. Rev. X*,
6
(2016),
021009.

**C1.**
Gerlach R, Peiris MS and Lin EMH**:**
Bayesian estimation and inference for log-ACD models.
*Computational Statistics*,
31
(2016),
no.1,
25–48.

**C1.**
Ghanbarnejad F, Gerlach M, Miotto JM and Altmann EG**:**
Extracting information from S-curves of language change.
*J. R. Soc. Interface*,
11
(2016),
20141044.

**C1.**
Ghazanfar S, Bisogni AJ, Ormerod JT, Lin DM and Yang YH**:**
Integrated single cell data analysis reveals cell specific networks and novel coactivation markers.
*BMC Systems Biology*,
10
(2016),
no.S5,
11–24.

**C1.**
Ghazanfar S and Yang YH**:**
Characterizing mutation–expression network relationships in multiple cancers.
*Computational Biology and Chemistry*,
63
(2016),
73–82.

**C1.**
Goldstein JA, Hauer D and Rhandi A**:**
Existence and nonexistence of positive solutions of \(p\)-Kolmogorov equations perturbed by a Hardy potential.
*Nonlinear Analysis*,
131
(2016),
121 – 154.

**C1.**
Goldys B, Le KN and Tran T**:**
A finite element approximation for the stochastic Landau–Lifshitz–Gilbert equation.
*Journal of Differential Equations*,
260
(2016),
937–970.

**C1.**
Goldys B, Peszat S and Zabczyk J**:**
Gauss-Markov processes on Hilbert spaces.
*Transactions of the American Mathematical Society*,
368
(2016),
no.1,
89–108.

**C1.**
Goldys B and Wu W**:**
Dynamic programming principle for stochastic control problems driven by general Lévy noise.
*Stochastic Analysis and Applications*,
34
(2016),
no.6,
1083–1093.

**C1.**
Gottwald GA and Melbourne I**:**
Broadband nature of power spectra for intermittent maps with summable and nonsummable decay of correlations.
*Journal of Physics A*,
49
(2016),
no.17,
174003.

**C1.**
Gottwald GA and Melbourne I**:**
Central limit theorems and suppression of anomalous diffusion for systems with symmetry.
*Nonlinearity*,
29
(2016),
2941–2960.

**C1.**
Gottwald GA and Melbourne I**:**
On the detection of superdiffusive behaviour in time series.
*Journal of Statistical Mechanics*,
2016
(2016),
no.12,
123205+17.

**C1.**
Gottwald GA, Peters K and Davies L**:**
A data-driven method for the stochastic parametrisation of subgrid-scale tropical convective area fraction.
*Q.J.R. Meteorolog. Soc.*,
142
(2016),
349–359.

**C1.**
Gottwald GA, Wormell JP and Wouters J**:**
On spurious detection of linear response and misuse of the fluctuation–dissipation theorem in finite time series.
*Physica D*,
331
(2016),
89–101.

**C1.**
Griffiths PT, Gallagher MT and Stephen SO**:**
The effect of non-Newtonian viscosity on the stability of the Blasius boundary layer.
*Physics of Fluids*,
28
(2016),
Art. 074107 (19 pages).

**C1.**
Guo I and Rutkowski M**:**
Discrete time stochastic multi-player competitive games with affine payoffs.
*Stochastic Processes and their Applications*,
126
(2016),
1–32.

**C1.**
Hayes M, Kaper T, Szmolyan P and Wechselberger M**:**
Geometric desingularization of degenerate singularities in the presence of rotation: a new proof of known results for slow passage through Hopf bifurcation.
*Indagationes Mathematicae*,
27
(2016),
1184–1203.

**C1.**
Hofmann T and Zhang Y**:**
Valuations of \(p\)-adic regulators of cyclic cubic fields.
*Journal of Number Theory*,
169
(2016),
86–102.

**C1.**
Howlett RB and Nguyen VM**:**
\(W\)-graph ideals and biideals.
*Journal of Algebraic Combinatorics*,
43
(2016),
no.1,
237–275.

**C1.**
Hu J and Mathas A**:**
Seminormal forms and cyclotomic quiver Hecke algebras of type A.
*Mathematische Annalen*,
364
(2016),
no.3-4,
1189–1254.

**C1.**
Hussain Z, Garrett SJ, Stephen SO and Griffiths PT**:**
The centrifugal instability of the boundary-layer flow over a slender rotating cone in an enforced axial free stream.
*Journal of Fluid Mechanics*,
788
(2016),
70–94.

**C1.**
Jaco W, Johnson J, Spreer J and Tillmann S**:**
Bounds for the genus of a normal surface.
*Geometry and Topology*,
20
(2016),
1625–1671.

**C1.**
Jayawardana K, Schramm SJ, Tembe V, Müller S, Thompson JF, Scolyer RA, Mann GJ and Yang YH**:**
Identification, Review, and Systematic Cross-Validation of microRNA Prognostic Signatures in Metastatic Melanoma.
*Journal of Investigative Dermatology*,
136
(2016),
245–254.

**C1.**
Jinton O and Wang Q**:**
Nonparametric transformation regression with nonstationary data.
*Econometric Theory*,
32
(2016),
1–29.

**C1.**
Jones CKRT, Marangell R, Miller PD and Plaza RG**:**
On the Spectral and Modulational Stability of Periodic Wavetrains for Nonlinear Klein-Gordon Equations.
*Bulletin of the Brazilian Mathematical Society (New Series)*,
47
(2016),
no.2,
417–429.

**C1.**
Joshi N and Lobb S**:**
Singular dynamics of a q-difference Painlevé equation in its initial-value space.
*Journal of Physics A: Mathematical and Theoretical*,
49
(2016),
no.1,
014002 (24 pages).

**C1.**
Joshi N and Nakazono N**:**
Lax pairs of discrete Painlevé equations: \( (A_2 + A_1)^{(1)} \) case.
*Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences*,
472
(2016),
no.2196,
13 pages.

**C1.**
Joshi N, Nakazono N and Shi Y**:**
Reflection groups and discrete integrable systems.
*Journal of Integrable Systems*,
(2016),
(37 pages).

**C1.**
Joshi N, Nakazono N and Shi Y**:**
Lattice equations arising from discrete Painlevé systems. II. \(A_4^{(1)}\) case.
*Journal of Physics A: Mathematical and Theoretical*,
(2016),
(to appear, 30 pages).

**C1.**
Joshi N and Radnović M**:**
Asymptotic Behavior of the Fourth Painlevé Transcendents in the Space of Initial Values.
*Constructive Approximation*,
Online First
(2016),
1–37.

**C1.**
Julien K, Aurnou JM, Calkins MA, Knobloch E, Marti P, Stellmach S and Vasil GM**:**
A nonlinear model for rotationally constrained convection with Ekman pumping.
*Journal of Fluid Mechanics*,
798
(2016),
50–87.

**C1.**
Katz E and Stapledon A**:**
Tropical geometry, the motivic nearby fiber, and limit mixed Hodge numbers of hypersurfaces.
*Research in the Mathematical Sciences*,
3
(2016),
no.10,
1–36.

**C1.**
Kawai R**:**
Anomalous spreading and misidentification of spatial random walk models.
*Applied Mathematical Modelling*,
40
(2016),
no.9-10,
5283–5291.

**C1.**
Kawai R**:**
Higher Order Fractional Stable Motion: Hyperdiffusion with Heavy Tails.
*Journal of Statistical Physics*,
165
(2016),
no.1,
126–152.

**C1.**
Klaff B and Tillmann S**:**
A birationality result for character varieties.
*Mathematical Research Letters*,
23
(2016),
no.4,
1099–1110.

**C1.**
Kožić S**:**
Vertex operators and principal subspaces of level one for \(U_q (\widehat{\mathfrak{sl}}_2)\).
*Journal of Algebra*,
455
(2016),
251–290.

**C1.**
Koop JAH, Kim PS, Knutie SA, Adler FR and Clayton DH**:**
An introduced parasitic fly may lead to local extinction of Darwin’s finch populations.
*Journal of Applied Ecology*,
53
(2016),
no.2,
511–518.

**C1.**
Leitao JC, Miotto JM, Gerlach M and Altmann EG**:**
Is this scaling nonlinear?.
*Royal Society Open Science*,
3
(2016),
150649.

**C1.**
Liang H, Phillips P, Wang H and Wang Q**:**
Weak Covergence to Stochastic Integrals for Econometric Applications.
*Econometric Theory*,
32
(2016),
no.6,
1349–1375.

**C1.**
Madore J, Strbenac D, Vilain R, Menzies AM, Yang YH, Thompson JF, Long GV, Mann GJ, Scolyer RA and Wilmott JS**:**
PD-L1 Negative Status is Associated with Lower Mutation Burden, Differential Expression of Immune-Related Genes, and Worse Survival in Stage III Melanoma.
*Clinical Cancer Research*,
22
(2016),
no.15,
3915–3923.

**C1.**
Manescu D and Keich U**:**
A Symmetric Length-Aware Enrichment Test.
*Journal of Computational Biology*,
23
(2016),
no.6,
508–525.

**C1.**
Markus MA, Yang YH and Morris BJ**:**
Transcriptome-wide targets of alternative splicing by RBM4 and possible role in cancer.
*Genomics*,
107
(2016),
no.4,
138–144.

**C1.**
McNamara PJ**:**
The metaplectic Casselman-Shalika formula.
*Transactions of the American Mathematical Society*,
368
(2016),
2913–2937.

**C1.**
Molev AI, Ragoucy E and Rozhkovskaya N**:**
Segal–Sugawara vectors for the Lie algebra of type \(G_2\).
*Journal of Algebra*,
455
(2016),
386–401.

**C1.**
Murray K, Müller S and Turlach BA**:**
Fast and flexible methods for monotone polynomial fitting.
*Journal of Statistical Computation and Simulation*,
86
(2016),
no.15,
2946–2966.

**C1.**
Nakazono N**:**
Hypergeometric \(\tau\) Functions of the \(q\)-Painlevé Systems of Types \(A_4^{(1)}\) and \((A_1+A_1')^{(1)}\).
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Stability Conditions for Gelfand–Kirillov Subquotients of Category O.
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BSDES driven by multidimensional martingales and their applications to markets with funding costs.
*Theory of Probability and its Applications - SIAM*,
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Ortiz A, Carnathan D, Yu J, Sheehan K, Kim PS, Reynaldi A, Vanderford T, Klatt N, Brenchley J, Davenport M and Silvestri G**:**
Analysis of the *in vivo* Turnover of CD4+ T-cell Subsets in Chronically SIV-Infected Sooty Mangabeys.
*PLoS One*,
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Parker NR, Hudson AL, Khong P, Parkinson JF, Dwight T, Ikin RJ, Zhu Y, Cheng ZJ, Vafaee F, Chen J, Wheeler HR and Howell VM**:**
Intratumoral heterogeneity identified at the epigenetic, genetic and transcriptional level in glioblastoma.
*Scientific Reports*,
6
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Peiris MS and Asai M**:**
Generalized Fractional Processes with Long Memory and Time Dependent Volatility Revisited.
*Econometrics*,
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21 pages.

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Poladian L and Zheng C**:**
Context, connections and communication: using journal articles in undergraduate mathematics.
*International Journal of Innovation in Science and Mathematics Education*,
25
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14–23.

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Rollo JL, Banihashemi N, Vafaee F, Crawford JW, Kuncic Z and Holsinger D**:**
Unraveling the mechanistic complexity of Alzheimer's disease through systems biology.
*Alzheimer's and Dementia*,
12
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708–718.

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Sala M, Leitao JC and Altmann EG**:**
Searching chaotic saddles in high dimensions.
*Chaos*,
26
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Seneta E**:**
Markov chains as models in statistical mechanics.
*Statistical Science*,
31
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399–414.

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Seneta E and Ku S**:**
Unique decomposition of low-order time series.
*Communications in Statistics. Theory and Methods*,
45
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3357–3366.

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Senior AM, Grueber CE, Kamiya T, Lagisz M, O’Dwyer K, Santos ESA and Nakagawa S**:**
Heterogeneity in ecological and evolutionary meta-analyses: its magnitude and implications.
*Ecology*,
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Senior AM, Grueber CE, Machovsky-Capuska G, Simpson SJ and Raubenheimer D**:**
Macronutritional consequences of food generalism in an invasive mammal, the wild boar.
*Mammalian Biology – Zeitschrift für Säugetierkunde*,
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Senior AM, Lihoreau M, Charleston MA, Buhl J, Raubenheimer D and Simpson SJ**:**
Adaptive collective foraging in groups with conflicting nutritional needs.
*Royal Society Open Science*,
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Sienkiewicz J and Altmann EG**:**
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*Royal Society Open Science*,
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Stark AE**:**
Determining the frequency of sporadic cases of rare X-linked disorders.
*Annals of Translational Medicine*,
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Stark AE**:**
The genetic epidemiology of the form of microcephaly ascribed to mutation at the WDR62 locus.
*Annals of Translational Medicine*,
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Strbenac D, Mann GJ, Yang YH and Ormerod JT**:**
Differential distribution improves gene selection stability and has competitive classification performance for patient survival.
*Nucleic Acids Research*,
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Su Y and Zhang RB**:**
Generalised Jantzen Filtrationof Exceptional Lie Superalgebras.
*Israel Journal of Mathematics*,
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Sutherland N**:**
Efficient Computation of Maximal Orders in Artin-Schreier-Witt Extensions.
*Journal of Symbolic Computation*,
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Assessing the Basel II internal ratings-based approach Empirical evidence from Australia.
*Journal of Financial Regulation and Compliance*,
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Tarr G, Müller S and Weber NC**:**
Robust Estimation of Precision Matrices under Cellwise Contamination.
*Computational Statistics and Data Analysis*,
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Thiel U**:**
Decomposition matrices are generically trivial.
*International Mathematics Research Notices*,
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A Riemann–Hilbert approach to Jacobi operators and Gaussian quadrature.
*IMA Journal of Numerical Analysis*,
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Using Multi-objective Optimization to Identify Dynamical Network Biomarkers as Early-warning Signals of Complex Diseases.
*Nature*,
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Tensor calculus in polar coordinates using Jacobi polynomials.
*Journal of Computational Physics*,
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53–73.

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Wang Q and Phillips PCB**:**
Nonparametric cointegrating regression with endogeneity and long memory.
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Dynamical stability of algebraic Ricci solitons.
*Journal für die Reine und Angewandte Mathematik (Crelle's Journal)*,
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*Computational Statistics and Data Anaysis*,
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Rare event computation in deterministic chaotic systems using genealogical particle analysis.
*Journal of Physics A: Mathematical and Theoretical*,
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*Nonlinear Processes in Geophysics*,
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Integrable representations of affine \(A(m, n)\) and \(C(m)\) superalgebras.
*Journal of Pure and Applied Algebra*,
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Integrable representations of the quantum affine special linear superalgebra.
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KinasePA: Phosphoproteomics data annotation using hypothesis driven kinase perturbation analysis.
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Autoregressive Conditional Duration Model with an Extended Weibull Error Distribution.
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Model selection and estimating degrees of freedom in Bayesian linear and linear mixed effect models.
*Bulletin of the Australian Mathematical Society*,
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General weak limit for Kähler-Ricci flow.
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"Thyroid Steal"—A Historical Approach to Thyroid Surgery for Graves' Disease.
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## Conference Proceedings

**E1.**
Sweatman WL, Mercer G, Boland J, Cusimano N, Greenwood A, Harley K, Heijster P, Kim PS, Maisano J, Nelson MA and Pettet G
(2016)
Seaweed cultivation and the remediation of by-products from ethanol production: a glorious green growth.
*2014 Mathematics and Statistics in Industry Study Group*,
*Proceedings of the 2014 Mathematics and Statistics in Industry Study Group, MISG-2014*,
T. Farrell and A. J. Roberts (ed.) ,
ANZIAM Journal, vol. 56,
ANZIAM,
ISBN N/A,
M1–M29.

**E1.**
Thiel U
(2016)
Restricted rational Cherednik algebras.
*Representation theory – current trends and perspectives*,
Henning Krause, Peter Littelmann, Gunter Malle, Karl-Hermann Neeb, Christoph Schweigert (ed.) ,
EMS Ser. Congr. Rep.,
EMS,
ISBN 978-3-03719-171-2,
681–745.

**E2.**
Fung T and Seneta E
(2016)
Tail dependence convergence rate of a skew-t and of a skew normal distribution.
*60th ISI World Statistics Congress.*,
*Proceedings of the 60th ISI World Statistics Congress.*,
Not known (ed.) ,
International Statistical Institute (ISI),
ISBN Digital resource,
2212–2217.