The software listed below is written in the R statistical programming language. It is open source and may be used without restrictions.
|Variability Analysis of Networks (VAN)||VAN allows for the statistical testing of diferences in correlation between hub genes and their partners.||Software||Journal Article|
|ClassifyR||Framework for cross-validated classification and functionality to evaluate performance metrics (e.g. error rate) and draw plots of them.||Software||Journal Article|
The web applications run on a high performance server at University of Sydney. Their source code is provided in the accompanying journal articles as a supplementary file.
|PACMEN||A tool for exploring the relationships between mutations and gene expression changes in protein interaction subnetworks for 19 tissues analysed by TCGA.||Web Application||Journal Article|
|KinasePA||Enables analysis of kinase perturbation experiments.||Web Application||Journal Article|
|QPEP||A benchmarking scoreboard and visual analytics tools for methods which affect proteomics quantitation.||Web Application||Journal Article|