Applied Statistics for Bioinformatics
This unit of study forms part of the Master of Applied Science (Bioinformatics) degree program.
Online resources
STAT5001: Applied Statistics for Bioinformatics (Semester 1, 2012)
Lecturers
Dr. Vivek Jayaswal, Carslaw 637
Dr.Jean Yang, Carslaw 824
Weblinks
- Lecture times, assessment details and other information [pdf]
- STAT-5001 Theory [pdf]
- Online statistical reference: [SticiGui]
- R User Guide [pdf]
- Preparing weekly reports using process utility and R Commands
- Instructions for writing weekly reports [doc]
Datasets for weekly labs
Weeks 1 to 7 [BloodSugarLevels.txt]
[icea]
[iceb]
[tablet1.txt]
[apoA1K1.spotmod]
[crab.data]
[apoA.RData]
[cig.txt]
Week 8 to 12 [ToothGrowth.txt]
[bac2]
[bac5]
[pollut.txt]
[brngs.txt]
[litters.txt]
[poisons]
[bcancer.RData]
Exam dataset:
Lectures
| Week | Date | Topic | Lecture Note | Lab Assignment | Lab Solution (pdf file) | Lab Solution (txt file) |
|---|---|---|---|---|---|---|
| 1 | Mar 6 | Descriptive statistics + Introduction to R | Lect 1 | Lab 1 | pdf file | source file |
| 2 | Mar 13 | Exploratory data analysis + Introduction to Sweave | Lect 2 | Lab 2 | pdf file | source file |
| 3 | Mar 20 | Population models and simulation + Introduction to Microarray | Lect 3 | Lab 3 | pdf file | source file |
| 4 | Mar 27 | Experimental design + correlation and regression | Lect 4 | Lab 4 | pdf file | source file |
| 5 | April 3 | Tests of significance | Lect 5 | Lab 5 | pdf file | source file |
| April 10 | Non-teaching week | |||||
| 6 | April 17 | Confidence intervals + Central Limit Theorem | Lect 6 | Lab 6 | pdf file | source file |
| 7 | April 24 | Microarray data analysis I - Non-linear smoother | Lect 7 | Lab 7 | pdf file | source file |
| 8 | May 1 | Analysis of variance | Lect 8 | Lab 8 | pdf file | source file |
| 9 | May 8 | Linear models and multiple regressions | Lect 9 | Lab 9 | pdf file | source file |
| 10 | May 15 | Microarray data analysis II - DE analysis and clustering | Lect 10 | Lab 10 | pdf file | source file |
| 11 | May 22 | Categorical data | Lect 11 | Lab 11 | pdf file | source file |
| 12 | May 29 | Revision | ||||
| 13 | June 5 | Final Exam |